miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|33454550|gb|CF235121.1|CF235121 GGACTCCAATCTCTGAGTTTGCTTCGCTCTCCACGCCTTCTTTCTCTGACTCTCTCTCTCTCTCCGTGGAGTGCGTTGTT
TCGGACCGAAATACCCTTGTGGAGAAAGCTACTCTCGAGTTGTTTTTGTGCGCTTGGTTTTTGAGGCTATGAGAAGAGGA
TACTTCTTTTTCTGAGGTGGAGACAATGATTTTAACAAAGCAATATCGTTGTATACACTCCTCGAGTTGTCAATGCACAA
AAGGGCATCTAAGTGAAGACGTGATTTTTTTAGTATTTCAACAGCTGAACTGGAACCCTAAGTTCATTGCTACTTTGTCC
TGTGTATGCAAATGGTTTGATGATCTTGCCAAGCGAGTGTTATGGAAGGAGTTTTGCCGAACAAGGGCTCCAAAGATGAT
GCTTGATCTGCAATCTAGTGGAAGTCACAGTGTTGATGGGAATTGGAGGGCACTTGGGAAACTGCTTATTTACTGTTCAG
GATGTACAAAGGGTGGCCTGTTCAATAACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCAAGGACTTCT
GGGAANAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGTGTCTGATCCCTGTGAACATCTTGACCAGGGGGA
TNAAGGGGACCTNGGGGTTTTTTCNAGGAATTTTCAAGTCATTTTCATGTCAAAGGNTCGGAAATGCTAATTAAA




Most similar to sp|Q9LF38|EDL1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis
           thaliana GN=EDL1 PE=2 SV=1
          Length = 293

 Score =  294 bits (753), Expect = 3e-79
 Identities = 136/174 (78%), Positives = 149/174 (85%), Gaps = 1/174 (0%)
 Frame = +3

Query: 186 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKFIATLSCVCKWFDDLAKRVLW 365
           MIL KQY C HS SCQCTKGHL+EDV+ LVFQ LNWNPK +ATLSCVC+WFDD AKRVLW
Sbjct: 1   MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60

Query: 366 KEFCRTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFN-NINIPGHFVYRT 542
           KEFC+TRAPKMMLDLQSSGSH +DGNWRALGKLLIYCSGCT+GGLFN ++ IPGHFVYRT
Sbjct: 61  KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120

Query: 543 RFSRTSGXSFLLPQCRTDVLYVSDPCEHLDQGDXGDLGVFSRNFQVIFMSKXRK 704
           RFSRT G S L PQCRTDVLYV DPCEHLDQG+ GD+G+F   F+    SK RK
Sbjct: 121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRK 174